Package | Description |
---|---|
de.unibi.citec.tcs.alignment |
This package contains the actual AlignmentAlgorithms as well as their return
classes.
|
Modifier and Type | Method and Description |
---|---|
StrictAlignmentFullAlgorithm.FullMatrixEntry |
StrictAlignmentFullAlgorithm.createDelInitial(StrictAlignmentFullAlgorithm.FullMatrixEntry delOld,
int i,
double delLocal)
This method should not be called from outside!
|
StrictAlignmentFullAlgorithm.FullMatrixEntry |
StrictAlignmentFullAlgorithm.createInitial()
This method should not be called from outside!
|
StrictAlignmentFullAlgorithm.FullMatrixEntry |
StrictAlignmentFullAlgorithm.createInsInitial(StrictAlignmentFullAlgorithm.FullMatrixEntry insOld,
int j,
double insLocal)
This method should not be called from outside!
|
StrictAlignmentFullAlgorithm.FullMatrixEntry |
StrictAlignmentFullAlgorithm.createNewEntry(StrictAlignmentFullAlgorithm.FullMatrixEntry delOld,
StrictAlignmentFullAlgorithm.FullMatrixEntry insOld,
StrictAlignmentFullAlgorithm.FullMatrixEntry repOld,
int i,
int j,
double delLocal,
double insLocal,
double repLocal)
This method should not be called from outside!
|
StrictAlignmentFullAlgorithm.FullMatrixEntry |
StrictAlignmentFullAlgorithm.FullMatrixEntry.getPredecessor() |
Modifier and Type | Method and Description |
---|---|
StrictAlignmentFullAlgorithm.FullMatrixEntry |
StrictAlignmentFullAlgorithm.createDelInitial(StrictAlignmentFullAlgorithm.FullMatrixEntry delOld,
int i,
double delLocal)
This method should not be called from outside!
|
StrictAlignmentFullAlgorithm.FullMatrixEntry |
StrictAlignmentFullAlgorithm.createInsInitial(StrictAlignmentFullAlgorithm.FullMatrixEntry insOld,
int j,
double insLocal)
This method should not be called from outside!
|
StrictAlignmentFullAlgorithm.FullMatrixEntry |
StrictAlignmentFullAlgorithm.createNewEntry(StrictAlignmentFullAlgorithm.FullMatrixEntry delOld,
StrictAlignmentFullAlgorithm.FullMatrixEntry insOld,
StrictAlignmentFullAlgorithm.FullMatrixEntry repOld,
int i,
int j,
double delLocal,
double insLocal,
double repLocal)
This method should not be called from outside!
|
AlignmentPath |
StrictAlignmentFullAlgorithm.transformToResult(StrictAlignmentFullAlgorithm.FullMatrixEntry[][] alignmentMatrix,
Sequence a,
Sequence b)
This method should not be called from outside!
|
Constructor and Description |
---|
StrictAlignmentFullAlgorithm.FullMatrixEntry(double score,
int i,
int j,
StrictAlignmentFullAlgorithm.FullMatrixEntry predecessor) |
Copyright (C) 2013, 2014 Benjamin Paaßen, Charlie Krüger, Georg Zentgraf, AG Theoretical Computer Science, Centre of Excellence Cognitive Interaction Technology (CITEC), University of Bielefeld, licensed under the AGPL v. 3: http://openresearch.cit-ec.de/projects/tcs