Package | Description |
---|---|
de.citec.tcs.alignment |
This module defines the interface for AlignmentAlgorithms as
well as some helper classes.
|
de.citec.tcs.alignment.adp |
This package contains a more general approach to construct
AlignmentAlgorithms by relying on the theoretical concept of Algebraic
Dynamic Programming (ADP) as developed by Giegerich et al.
|
de.citec.tcs.alignment.comparators |
This module defines the interfaces for comparators in the TCS
Alignment Toolbox.
|
de.citec.tcs.alignment.sequence |
This module contains the sequence datastructure of the
TCS Alignment Toolbox.
|
de.citec.tcs.alignment.wrappers |
This module contains some wrappers to make usage of the
TCSAlignmentToolbox easier.
|
Class and Description |
---|
IndexingScheme
This serves as an abstract superclass for classes that define an indexing
scheme for keywords.
|
Node
This is a node in a Sequence storing values for the keywords defined in the
sequence.
|
NodeSpecification
This specifies the contents of the nodes in a given sequence.
|
Sequence
Usually a sequence for alignments is defined as a sequence of symbols.
|
Value
This represents a single value for a keyword in a given node.
|
Class and Description |
---|
Sequence
Usually a sequence for alignments is defined as a sequence of symbols.
|
Value
This represents a single value for a keyword in a given node.
|
Class and Description |
---|
Alphabet
An alphabet is an ordered set of arbitrary symbols.
|
KeywordSpecification
This specifies a keyword via its name and the type of its values.
|
NodeSpecification
This specifies the contents of the nodes in a given sequence.
|
StringValue
This value is supposed to represent strings that are not restricted to a
certain alphabet.
|
SymbolicValue
This is a special value class that is restricted to a finite list of values
defined by an alphabet.
|
Value
This represents a single value for a keyword in a given node.
|
ValueType
This defines all possible types of values.
|
VectorialKeywordSpecification
This specifies vectors by their length.
|
VectorialValue
This value is reserved for numeric vectors, represented internally as
doubles.
|
Class and Description |
---|
AbstractValue
This is a convenience implementation of the Value interface.
|
Alphabet
An alphabet is an ordered set of arbitrary symbols.
|
IndexingScheme
This serves as an abstract superclass for classes that define an indexing
scheme for keywords.
|
KeywordSpecification
This specifies a keyword via its name and the type of its values.
|
Node
This is a node in a Sequence storing values for the keywords defined in the
sequence.
|
NodeSpecification
This specifies the contents of the nodes in a given sequence.
|
Sequence
Usually a sequence for alignments is defined as a sequence of symbols.
|
Value
This represents a single value for a keyword in a given node.
|
ValueType
This defines all possible types of values.
|
Class and Description |
---|
Alphabet
An alphabet is an ordered set of arbitrary symbols.
|
NodeSpecification
This specifies the contents of the nodes in a given sequence.
|
Sequence
Usually a sequence for alignments is defined as a sequence of symbols.
|
VectorialValue
This value is reserved for numeric vectors, represented internally as
doubles.
|
Copyright (C) 2013-2015 Benjamin Paaßen, Georg Zentgraf, AG Theoretical Computer Science, Centre of Excellence Cognitive Interaction Technology (CITEC), University of Bielefeld, licensed under the AGPL v. 3: http://openresearch.cit-ec.de/projects/tcs