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TCS Alignment Toolbox 2.1.2 API

Packages 
Package Description
de.citec.tcs.alignment
This module defines the interface for AlignmentAlgorithms as well as some helper classes.
de.citec.tcs.alignment.adp
This package contains a more general approach to construct AlignmentAlgorithms by relying on the theoretical concept of Algebraic Dynamic Programming (ADP) as developed by Giegerich et al.
de.citec.tcs.alignment.comparators
This module defines the interfaces for comparators in the TCS Alignment Toolbox.
de.citec.tcs.alignment.csv
This module permits exporting and importing of Sequence objects to CSV files.
de.citec.tcs.alignment.learning
This module is a custom implementation of the Large Margin Nearest Neighbor classification scheme of Weinberger, Saul, et al.
de.citec.tcs.alignment.parallel
This module provides a very basic support for the parallel computing of tasks (Engine class) and entries of a matrix (MatrixEngine).
de.citec.tcs.alignment.sequence
This module contains the sequence datastructure of the TCS Alignment Toolbox.
de.citec.tcs.alignment.visualization
This module contains means to visualize AlignmentPaths.
de.citec.tcs.alignment.wrappers
This module contains some wrappers to make usage of the TCSAlignmentToolbox easier.
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Copyright (C) 2013-2015 Benjamin Paaßen, Georg Zentgraf, AG Theoretical Computer Science, Centre of Excellence Cognitive Interaction Technology (CITEC), University of Bielefeld, licensed under the AGPL v. 3: http://openresearch.cit-ec.de/projects/tcs . This documentation is licensed under the conditions of CC-BY-SA 4.0: https://creativecommons.org/licenses/by-sa/4.0/